Currently there's no functionality to integrate with more than one WooCommerce store per Inkthreadable account, but it's something our developers are working on.

In the meantime you'll need to open a new Inkthreadable account for each WooCommerce store you'd like to integrate with. Inkthreadable accounts are free and easy to set up, though we do appreciate it's not an ideal solution, so whilst it's the method we'd recommend at the moment there's a more elegant option on the way! 

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